Package index
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basinArm - A Basin-Arm table for Sea-bird CTD data
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ctdSites - A site table for Sea-bird CTD data
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emsSites - A site table for EMS data
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ems_metals_init - An initialized table for EMS metals data
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ems_param_lookup - A lookup table for for selecting the desired columns from EMS
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ems_standard_init - An initialized table for EMS standard data
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initialize_ctd() - Initialize tables for database
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lakes - A lakes table for Sea-bird CTD data
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mysid_input_cols - A named character vector with the correct column names, data types, and order for raw mysid data
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mysid_params - A character vector of all parameters for the mysid data in the database
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nrp_add_phyto_species() - Add new phytoplankton species to the 'PhytoplanktonSpecies' table in the database
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nrp_add_sites() - Add new sites to the 'Sites' table in the database.
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nrp_create_db() - Create NRP SQLite Database
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nrp_download_ctd() - Download CTD data table from database
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nrp_download_ctd_basin_arm() - Download BasinArm table
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nrp_download_ctd_visit() - Download CTD visit table
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nrp_download_ems() - Dowload EMS data table from database
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nrp_download_lakes() - Download Lake table
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nrp_download_mysid() - Download Mysid data table from database
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nrp_download_mysid_sample() - Download Mysid sample table
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nrp_download_phyto() - Download Phytoplankton data table from database
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nrp_download_phyto_species() - Download phytoplankton species table
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nrp_download_sites() - Download CTD site table
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nrp_download_zoo_sample() - Download Zooplankton sample table
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nrp_download_zooplankton() - Download Zooplankton data table from database
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nrp_extract_ems() - Extract and clean EMS data
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nrp_read_ctd() - Read CTD Files
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nrp_read_ctd_file() - Read CTD File
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nrp_read_mysid() - Read mysid raw data files
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nrp_read_mysid_file() - Read mysid raw data file
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nrp_read_phyto() - Read phytoplankton raw data files
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nrp_read_phyto_file() - Read phytoplankton raw data file
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nrp_read_zooplankton() - Read zooplankton raw data files
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nrp_read_zooplankton_file() - Read zooplankton raw data file
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nrp_upload_ctd() - Upload CTD data to nrp database
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nrp_upload_ems_metals() - Upload EMS metals data to nrp database
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nrp_upload_ems_standard() - Upload standard EMS data to nrp database
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nrp_upload_mysid() - Upload mysid data to the nrp database
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nrp_upload_phyto() - Upload phyto data to the nrp database
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nrp_upload_zooplankton() - Upload zooplankton data to the nrp database
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phyto_input_cols - A named character vector with the correct column names, data types, and order for raw phytoplankton data
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phyto_species - A reference table for phytoplankton species
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site_date_lookup - A lookup table for matching historical file names with Site IDs and Dates
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zoo_input_cols - A named character vector with the correct column names, data types, and order for raw zooplankton data
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zoo_params - A character vector of all parameters for the zooplankton data in the database