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Plot Species Sensitivity Data

Source: R/plot-data.R
ssd_plot_data.Rd

Plots species sensitivity data.

Usage

ssd_plot_data(
  data,
  left = "Conc",
  right = left,
  ...,
  label = NULL,
  shape = NULL,
  color = NULL,
  size = 2.5,
  xlab = "Concentration",
  ylab = "Species Affected",
  shift_x = 3,
  add_x = 0,
  big.mark = ",",
  decimal.mark = getOption("OutDec", "."),
  suffix = "%",
  bounds = c(left = 1, right = 1),
  trans = "log10",
  xbreaks = waiver()
)

Arguments

data

A data frame.

left

A string of the column in data with the concentrations.

right

A string of the column in data with the right concentration values.

...

Unused.

label

A string of the column in data with the labels.

shape

A string of the column in data for the shape aesthetic.

color

A string of the column in data for the color aesthetic.

size

A number for the size of the labels. Deprecated for label_size. #' [Deprecated]

xlab

A string of the x-axis label.

ylab

A string of the x-axis label.

shift_x

The value to multiply the label x values by (after adding add_x).

add_x

The value to add to the label x values (before multiplying by shift_x).

big.mark

A string specifying the thousands separator.

decimal.mark

A string specifying the numeric decimal point.

suffix

Additional text to display after the number on the y-axis.

bounds

A named non-negative numeric vector of the left and right bounds for uncensored missing (0 and Inf) data in terms of the orders of magnitude relative to the extremes for non-missing values.

trans

A string of which transformation to use. Accepted values include "log10", "log", and "identity" ("log10" by default).

xbreaks

The x-axis breaks as one of:

  • NULL for no breaks

  • waiver() for the default breaks

  • A numeric vector of positions

See also

ssd_plot() and geom_ssdpoint()

Examples

ssd_plot_data(ssddata::ccme_boron, label = "Species", shape = "Group")