Bind/Combine

Bind or combine chains or objects

reexports as.mcmc as_nlist as_nlists as.term as_term bind_chains bind_iterations collapse_chains converged esr estimates median dims zscore lower upper pvalue svalue nlist nlists complete_terms fill_all fill_na nchains niters npars npdims nterms parameters parameters pars pdims rhat set_pars pars split_chains thin tidy

Objects exported from other packages

bind_chains(<mcarray>)

Bind by Chains.

bind_chains(<mcmc>)

Bind by Chains.

bind_chains(<mcmc.list>)

Bind by Chains.

bind_chains(<mcmcarray>)

Bind by Chains.

bind_chains(<mcmcr>)

Bind by Chains.

bind_dimensions()

Combine two MCMC objects by dimensions

bind_dimensions_n()

Combine multiple MCMC objects by parameter dimensions

bind_parameters()

Combine two MCMC object by parameters

combine_dimensions()

Combine samples by dimensions

combine_samples()

Combine MCMC samples of two objects

combine_samples_n()

Combine MCMC samples of multiple objects

converged(<default>)

Converged

converged(<mcmcrs>)

Converged

Calculate

Calculate

coef(<mcmc>)

Term coefficients

reexports as.mcmc as_nlist as_nlists as.term as_term bind_chains bind_iterations collapse_chains converged esr estimates median dims zscore lower upper pvalue svalue nlist nlists complete_terms fill_all fill_na nchains niters npars npdims nterms parameters parameters pars pdims rhat set_pars pars split_chains thin tidy

Objects exported from other packages

esr(<mcarray>)

Effective Sampling Rate

esr(<mcmc>)

Effective Sampling Rate

esr(<mcmc.list>)

Effective Sampling Rate

esr(<mcmcarray>)

Effective Sampling Rate

esr(<mcmcr>)

Effective Sampling Rate

esr(<mcmcrs>)

Effective Sampling Rate

ess()

P-Value effective sample size

estimates(<mcarray>)

Estimates

estimates(<mcmc>)

Estimates

estimates(<mcmc.list>)

Estimates

estimates(<mcmcarray>)

Estimates

estimates(<mcmcr>)

Estimates

rhat(<mcarray>)

R-hat

rhat(<mcmc>)

R-hat

rhat(<mcmc.list>)

R-hat

rhat(<mcmcarray>)

R-hat

rhat(<mcmcr>)

R-hat

rhat(<mcmcrs>)

R-hat

Check

Check objects

check_mcmcarray()

soft-deprecated Check mcmcarray

check_mcmcr()

soft-deprecated Check mcmcr

chk_mcmcarray() chk_mcmcr() chk_mcmcrs()

Check MCMC objects

Coerce or Create

Coerce, convert or create object

reexports as.mcmc as_nlist as_nlists as.term as_term bind_chains bind_iterations collapse_chains converged esr estimates median dims zscore lower upper pvalue svalue nlist nlists complete_terms fill_all fill_na nchains niters npars npdims nterms parameters parameters pars pdims rhat set_pars pars split_chains thin tidy

Objects exported from other packages

as.mcmc(<mcarray>)

Markov Chain Monte Carlo Objects

as.mcmc(<mcmc>)

Markov Chain Monte Carlo Objects

as.mcmc(<mcmcarray>)

Markov Chain Monte Carlo Objects

as.mcmc(<mcmcr>)

Markov Chain Monte Carlo Objects

as.mcmcr()

Convert to an mcmcr object

as.mcmcrs()

Convert to an mcmcrs object

as.mcarray() as.mcmcr(<list>)

Coerce to an mcarray object

as.mcmcarray()

Coerce to an mcmcarray object

as_nlist(<mcmcr>)

Coerce to nlist

as_nlists(<mcmcr>)

Coerce to nlists

mcmcrs()

Create mcmcrs

Identify

Identify objects

is.mcarray()

Is mcarray object

is.mcmcarray()

Is mcmcarray object

is.mcmcr()

Is mcmcr object

is.mcmcrs()

Is mcmcrs object

Manipulate

Manipulate Objects

reexports as.mcmc as_nlist as_nlists as.term as_term bind_chains bind_iterations collapse_chains converged esr estimates median dims zscore lower upper pvalue svalue nlist nlists complete_terms fill_all fill_na nchains niters npars npdims nterms parameters parameters pars pdims rhat set_pars pars split_chains thin tidy

Objects exported from other packages

collapse_chains(<mcmcr>)

Collapse Chains

fill_all(<mcarray>)

Fill All Values

fill_all(<mcmcarray>)

Fill All Values

fill_all(<mcmcr>)

Fill All Values

fill_na(<mcarray>)

Fill Missing Values

fill_na(<mcmcarray>)

Fill Missing Values

fill_na(<mcmcr>)

Fill Missing Values

mcmc_aperm()

MCMC object transposition

mcmc_map()

MCMC map

set_pars(<mcmcr>)

Set Parameters

set_pars(<mcmcrs>)

Set Parameters

split_chains(<mcmcarray>)

Split Chains

split_chains(<mcmcr>)

Split Chains

subset(<mcmcarray>) subset(<mcmcr>) subset(<mcmcrs>)

Subset an MCMC object

zero()

Zero MCMC sample values

Objects

Objects

mcmcarray-object mcmcarray_object

mcmcarray

mcmcr-object mcmcr_object

mcmcr

mcmcr_example

An example mcmcr object

mcmcrs-object mcmcrs_object

mcmcrs

Query

Query object’s dimensions/parameters

reexports as.mcmc as_nlist as_nlists as.term as_term bind_chains bind_iterations collapse_chains converged esr estimates median dims zscore lower upper pvalue svalue nlist nlists complete_terms fill_all fill_na nchains niters npars npdims nterms parameters parameters pars pdims rhat set_pars pars split_chains thin tidy

Objects exported from other packages

nchains(<mcarray>)

Number of Chains

nchains(<mcmcarray>)

Number of Chains

nchains(<mcmcr>)

Number of Chains

nchains(<mcmcrs>)

Number of Chains

niters(<mcarray>)

Number of Iterations

niters(<mcmcarray>)

Number of Iterations

niters(<mcmcr>)

Number of Iterations

niters(<mcmcrs>)

Number of Iterations

npars(<mcarray>)

Number of Parameters

npars(<mcmcarray>)

Number of Parameters

npars(<mcmcr>)

Number of Parameters

npdims(<mcmcarray>)

Number of Parameter Dimensions

npdims(<mcmcr>)

Number of Parameter Dimensions

nterms(<mcmcarray>)

Number of Terms

nterms(<mcmcr>)

Number of Terms

nterms(<mcmcrs>)

Number of Terms

params

Parameter descriptions

pars(<mcmcr>)

Parameter Names

pars(<mcmcrs>)

Parameter Names

pdims(<mcarray>)

Parameter Dimensions

pdims(<mcmcarray>)

Parameter Dimensions

pdims(<mcmcr>)

Parameter Dimensions

Validate

Validate MCMC objects

vld_mcmcarray() vld_mcmcr() vld_mcmcrs()

Validate MCMC objects