Changelog

Source: NEWS.md

embr 0.2.0

• Add sensitivity() function to summarize powerscaled sensitivity analysis for reports.

embr 0.1.1

• Add functions to do powerscaling sensitivity analyses on mb_analysis objects, using the priorsense package.

embr 0.1.0

• Add stan_engine argument to analyse() and methods to allow setting cmdstan engine and implementation of cmdstanr features via methods in smbr2 package.
• Add seed and niters_warmup arguments to analyse() and methods so that can be used by smbr and smbr2.
• Pass ... to analyse_data() and analyse1() to allow additional arguments to be passed to cmdstanr functions.

embr 0.0.1.9038

• Remove logLik and IC columns from glance output.

embr 0.0.1.9037

Features

• Add get_analysis_mode() function to get current package options

embr 0.0.1.9036

Features

• Implement "pmb_code" class to support a strict subset of the nimble language (#64).

• check_model_pars() returns derived (#62).

Chore

• engine = "jags".

• Use raw GitHub file.

• Get JAGS.exe from S3 bucket.

• Relax test.

embr 0.0.1.9035

• Remove param_type and scalar arguments from pars.character() and pars.mb_code() and scalar from pars.model() and add "raw" parameter type to pars.mb_model() and pars.mb_analysis().

embr 0.0.1.9034

• Set default value of new_expr_vec to be getOption("mb.new_expr_vec", FALSE)
• Add new_expr_vec = FALSE to predict().

embr 0.0.1.9033

• Automatically wrap new expression if more than one.
• Set new_expr_vec to be flag that FALSE by default.
• Add new_expr = FALSE argument to mcmc_derive.mb_analyses.

embr 0.0.1.9032

• mcmc_derive() and mcmc_derive_data() no longer vectorize new expression by default
• Rename from mbr to embr.
• posterior_predictive_check() now gives zeros by default.
• soft deprecated plot_data().
• make pars.character() internal only.

embr 0.0.1.9031

• Added ref_fun2 argument.

• Added random_effects argument to predict etc to control random effects.

• Merge pull request #30 from poissonconsulting/changes_to_actions.

Updating R CMD check Actions

• Merge pull request #29 from poissonconsulting/chkor.

replace chkor

• Added zeros = FALSE argument to posterior_predictive_check() and type = NULL to residuals and simulate residuals.

• Remove zeros from posterior predictive checks.

• No longer export mcmc packages.

• Merge branch ‘master’ of github.com:poissonconsulting/embr.

• Renamed resample_residuals() to simulate_residuals().

• Added resample residuals which alters residual code!

embr 0.0.1.9030

• Added posterior_predictive_check().

embr 0.0.1.9029

• fix up simplify = TRUE

• add deltaIC to glance()

• add split and bound to rhat and converged

• add deltaIC to glance()

• add marginalize_random_effects argument to data_set

• numericize difftime values as cause problems for STAN

• set_analysis_mode() now ensures all options are set unless mode = "reset" and rhat has been decreased from 1.1 to 1.05 for report mode and from 1.05 to 1.01 for paper mode.

• parameters() now returns character(0) as opposed to NULL if no parameters.

• Rename derive() and derive_data() to mcmc_derive() and mcmc_derive_data().

• Moved pow() to mcmcderive package.

embr 0.0.1

• Added a NEWS.md file to track changes to the package.