Package index • bboutools

All functions

augment(<bboufit>): Get Augmented Data from bboufit Object

augment(<bboufit_ml>): Get Augmented Data from bboufit_ml Object

bb_fit_recruitment(): Fit Recruitment Model

bb_fit_recruitment_ml(): Fit Recruitment Model with Maximum Likelihood

bb_fit_survival(): Fit Survival Model

bb_fit_survival_ml(): Fit Survival Model with Maximum Likelihood

bb_plot_month(): Plot Month

bb_plot_month_survival(): Plot Monthly Survival

bb_plot_year(): Plot Year

bb_plot_year_calf_cow_ratio(): Plot Year Calf-Cow Ratio

bb_plot_year_growth(): Plot Year Population Growth

bb_plot_year_population_change(): Plot Year Population Change

bb_plot_year_recruitment(): Plot Year Recruitment

bb_plot_year_survival(): Plot Year Survival

bb_plot_year_trend_calf_cow_ratio(): Plot Annual Calf-Cow Ratio Trend

bb_plot_year_trend_recruitment(): Plot Annual Recruitment Trend

bb_plot_year_trend_survival(): Plot Annual Survival Trend

bb_predict_calf_cow_ratio(): Predict Calf-Cow Ratio

bb_predict_calf_cow_ratio_trend(): Predict Calf-Cow Ratio Trend

bb_predict_growth() bb_predict_lambda(): Predict Population Growth Lambda

bb_predict_population_change(): Predict Population Change

bb_predict_recruitment(): Predict Recruitment

bb_predict_recruitment_trend(): Predict Recruitment Trend

bb_predict_survival(): Predict Survival

bb_predict_survival_trend(): Predict Survival Trend

bb_priors_recruitment(): Recruitment model default priors

bb_priors_survival(): Survival model default priors

coef(<bboufit>): Get Tidy Tibble from bboufit Object.

coef(<bboufit_ml>): Get Tidy Tibble from bboufit_ml Object.

converged(<bboufit>): Get Convergence of bboufit Object

converged(<bboufit_ml>): Get Convergence of bboufit_ml Object

esr(<bboufit>): Get Effective Sample Rate of bboufit Object

estimates(<bboufit>): Estimates for bboufit Object

estimates(<bboufit_ml>): Estimates for bboufit_ml Object

glance(<bboufit>): Get a Glance Summary of bboufit Object

glance(<bboufit_ml>): Get a Glance Summary of bboufit_ml Object

model_code(): Get Model Code

model_recruitment(): Build Nimble recruitment model.

model_survival(): Build Nimble survival model.

nchains(<bboufit>): Get Number of Chains from bboufit Object

niters(<bboufit>): Get Number of Iterations from bboufit Object

npars(<bboufit>): Get Number of Parameters from bboufit Object

npars(<bboufit_ml>): Get Number of Parameters from bboufit_ml Object

nterms(<bboufit>): Get Number of Terms from bboufit Object

nterms(<bboufit_ml>): Get Number of Terms from bboufit_ml Object

pars(<bboufit>): Get Parameters from bboufit Object

pars(<bboufit_ml>): Get Parameters from bboufit_ml Object

predict(<bboufit_recruitment>): Predict Recruitment

predict(<bboufit_survival>): Predict Survival

rhat(<bboufit>): Get Rhat of bboufit Object

samples(): Get MCMC samples

tidy(<bboufit>): Get Tidy Tibble from bboufit Object.

tidy(<bboufit_ml>): Get Tidy Tibble from bboufit_ml Object.