Function reference • extras

Manipulate Objects Functions to numericise and fill objects
`numericise()` `numericize()`	Numericise (or Numericize)
`fill_na()`	Fill Missing Values
`fill_all()`	Fill All Values
Summary Functions Functions to summarise MCMC vectors as scalars
`lower()`	Lower Credible Limit
`upper()`	Upper Credible Limit
`zscore()`	Z-Score
`pvalue()`	Bayesian P-Value
`svalue()`	Surprisal Value
`xtr_mean()`	Mean
`xtr_median()`	Median
`xtr_sd()`	Standard Deviation
`variance()`	Variance
`skewness()`	Skewness
`kurtosis()`	Kurtosis
`zeros()`	Zeros
`pzeros()`	Proportion of Zeros
Conversion Functions Conversion functions
`fabs()`	Absolute
`exp2()`	Exponential Transformation of Base 2
`exp10()`	Exponential Transformation of Base 10
`ilog()`	Inverse Log Transformation
`ilog2()`	Inverse Log Base 2 Transformation
`ilog10()`	Inverse Log Base 10 Transformation
`ilogit()`	Inverse Logistic Transformation
`invlogit()`	Inverse Logistic Transformation
`inv_odds()`	Inverse Odds
`log2<-`()	Log Base 2 Transformation
`log10<-`()	Log Base 10 Transformation
`logit()`	Logistic Transformation
`odds()`	Odds
`phi()`	Phi
`pow()`	Power
Odds Functions Odds functions
`inv_odds()`	Inverse Odds
`log_odds()`	Log Odds
`log_odds<-`()	Inverse Log Odds Transformation
`log_odds_ratio()`	Log-Odds Ratio
`log_odds_ratio2()`	Log Odds Ratio2
`odds()`	Odds
`odds<-`()	Inverse Odds Transformation
`odds_ratio()`	Odds Ratio
`odds_ratio2()`	Odds Ratio2
Proportional Functions Proportional functions
`proportional_change()`	Proportional Change
`proportional_change2()`	Proportional Change2
`proportional_difference()`	Proportional Difference
`proportional_difference2()`	Proportional Difference2
Translations Translations of BUGS/JAGS functions
`fabs()`	Absolute
`ilog()`	Inverse Log Transformation
`ilogit()`	Inverse Logistic Transformation
`invlogit()`	Inverse Logistic Transformation
`inv_logit()`	Inverse Logistic Transformation
`log<-`()	Log Transformation
`logit()`	Logistic Transformation
`logit<-`()	Logistic Transformation
`phi()`	Phi
`pow()`	Power
`step()`	Step
Checks and Validation Functions to check argument values
`chk_pars()` `vld_pars()`	Check Parameter Names
`chk_index()` `vld_index()`	Check Index
`chk_indices()` `vld_indices()`	Check Indices
Deviance Deviances and Deviance Residuals
`dev_bern()`	Bernoulli Deviances
`dev_beta_binom()`	Beta-Binomial Deviances
`dev_binom()`	Binomial Deviances
`dev_gamma()`	Gamma Deviances
`dev_gamma_pois()`	Gamma-Poisson Deviances
`dev_gamma_pois_zi()`	Zero-Inflated Gamma-Poisson Deviances
`dev_lnorm()`	Log-Normal Deviances
`dev_neg_binom()`	Negative Binomial Deviances
`dev_norm()`	Normal Deviances
`dev_pois()`	Poisson Deviances
`dev_pois_zi()`	Zero-Inflated Poisson Deviances
`dev_skewnorm()`	Skew Normal Deviances
`dev_student()`	Student's t Deviances
Residual Raw and Deviance Residuals
`res_bern()`	Bernoulli Residuals
`res_beta_binom()`	Beta-Binomial Residuals
`res_binom()`	Binomial Residuals
`res_gamma()`	Gamma Residuals
`res_gamma_pois()`	Gamma-Poisson Residuals
`res_gamma_pois_zi()`	Zero-Inflated Gamma-Poisson Residuals
`res_lnorm()`	Log-Normal Residuals
`res_neg_binom()`	Negative Binomial Residuals
`res_norm()`	Normal Residuals
`res_pois()`	Poisson Residuals
`res_pois_zi()`	Zero-Inflated Poisson Residuals
`res_skewnorm()`	Skew Normal Residuals
`res_student()`	Student's t Residuals
Log-Likelihood Log-likelihood functions
`log_lik_bern()`	Bernoulli Log-Likelihood
`log_lik_beta_binom()`	Beta-Binomial Log-Likelihood
`log_lik_binom()`	Binomial Log-Likelihood
`log_lik_gamma()`	Gamma Log-Likelihood
`log_lik_gamma_pois()`	Gamma-Poisson Log-Likelihood
`log_lik_gamma_pois_zi()`	Zero-Inflated Gamma-Poisson Log-Likelihood
`log_lik_lnorm()`	Log-Normal Log-Likelihood
`log_lik_neg_binom()`	Negative Binomial Log-Likelihood
`log_lik_norm()`	Normal Log-Likelihood
`log_lik_pois()`	Poisson Log-Likelihood
`log_lik_pois_zi()`	Zero-Inflated Poisson Log-Likelihood
`log_lik_skewnorm()`	Skew Normal Log-Likelihood
`log_lik_student()`	Student's t Log-Likelihood
Random Random sample functions
`ran_bern()`	Bernoulli Random Samples
`ran_beta_binom()`	Beta-Binomial Random Samples
`ran_binom()`	Binomial Random Samples
`ran_gamma()`	Gamma Random Samples
`ran_gamma_pois()`	Gamma-Poisson Random Samples
`ran_gamma_pois_zi()`	Zero-Inflated Gamma-Poisson Random Samples
`ran_lnorm()`	Log-Normal Random Samples
`ran_neg_binom()`	Negative Binomial Random Samples
`ran_norm()`	Normal Random Samples
`ran_pois()`	Poisson Random Samples
`ran_pois_zi()`	Zero-Inflated Poisson Random Samples
`ran_skewnorm()`	Skew Normal Random Samples
`ran_student()`	Student's t Random Samples
Bernoulli Bernoulli distribution functions
`dbern()` `pbern()` `qbern()` `rbern()`	Bernoulli Distribution
Skew Normal Skew Normal distribution functions
`dskewnorm()` `pskewnorm()` `qskewnorm()` `rskewnorm()`	Skew-Normal Distribution
Miscellaneous Miscellaneous functions
`par_pattern()`	Parameter Pattern
Generics Generic Functions
`as_list()`	As List
Deprecated Deprecated functions
`pextreme()`	Extreme Probability
`sextreme()`	Extreme Surprisal
`as_list_unnamed()`	As List

Reference

Manipulate Objects

Summary Functions

Conversion Functions

Odds Functions

Proportional Functions

Translations

Checks and Validation

Deviance

Residual

Log-Likelihood

Random

Bernoulli

Skew Normal

Miscellaneous

Generics

Deprecated